A new method for qualitative multi-scale analysis of bacterial biofilms on filamentous fungal colonies using confocal and electron microscopy

Bacterial biofilms frequently form on fungal surfaces and can be involved in numerous bacterial-fungal interaction processes, such as metabolic cooperation, competition, or predation. The study of biofilms is important in many biological fields, including environmental science, food production, and medicine. However, few studies have focused on such bacterial biofilms, partially due to the difficulty of investigating them. Most of the methods for qualitative and quantitative biofilm analyses described in the literature are only suitable for biofilms forming on abiotic surfaces or on homogeneous and thin biotic surfaces, such as a monolayer of epithelial cells.While laser scanning confocal microscopy (LSCM) is often used to analyze in situ and in vivo biofilms, this technology becomes very challenging when applied to bacterial biofilms on fungal hyphae, due to the thickness and the three dimensions of the hyphal networks. To overcome this shortcoming, we developed a protocol combining microscopy with a method to limit the accumulation of hyphal layers in fungal colonies. Using this method, we were able to investigate the development of bacterial biofilms on fungal hyphae at multiple scales using both LSCM and scanning electron microscopy (SEM). This report describes the protocol, including microorganism cultures, bacterial biofilm formation conditions, biofilm staining, and LSCM and SEM visualizations

An ectomycorrhizal fungus alters sensitivity to jasmonate, salicylate, gibberellin, and ethylene in host roots.

The phytohormones jasmonate, gibberellin, salicylate, and ethylene regulate an interconnected reprogramming network integrating root development with plant responses against microbes. The establishment of mutualistic ectomycorrhizal symbiosis requires the suppression of plant defense responses against fungi as well as the modification of root architecture and cortical cell wall properties. Here, we investigated the contribution of phytohormones and their crosstalk to the ontogenesis of ectomycorrhizae (ECM) between grey poplar (Populus tremula x alba) roots and the fungus Laccaria bicolor. To obtain the hormonal blueprint of developing ECM, we quantified the concentrations of jasmonates, gibberellins, and salicylate via liquid chromatography-tandem mass spectrometry. Subsequently, we assessed root architecture, mycorrhizal morphology, and gene expression levels (RNA sequencing) in phytohormone-treated poplar lateral roots in the presence or absence of L. bicolor. Salicylic acid accumulated in mid-stage ECM. Exogenous phytohormone treatment affected the fungal colonization rate and/or frequency of Hartig net formation. Colonized lateral roots displayed diminished responsiveness to jasmonate but regulated some genes, implicated in defense and cell wall remodelling, that were specifically differentially expressed after jasmonate treatment. Responses to salicylate, gibberellin, and ethylene were enhanced in ECM. The dynamics of phytohormone accumulation and response suggest that jasmonate, gibberellin, salicylate, and ethylene signalling play multifaceted roles in poplar L. bicolor ectomycorrhizal development

"Freshwater killer whales": beaching behavior of an alien fish to hunt land birds

The behavioral strategies developed by predators to capture and kill their prey are fascinating, notably for predators that forage for prey at, or beyond, the boundaries of their ecosystem. We report here the occurrence of a beaching behavior used by an alien and large-bodied freshwater predatory fish (Silurus glanis) to capture birds on land (i.e. pigeons, Columbia livia). Among a total of 45 beaching behaviors observed and filmed, 28% were successful in bird capture. Stable isotope analyses (δ¹³C and δ¹⁵N) of predators and their putative prey revealed a highly variable dietary contribution of land birds among individuals. Since this extreme behavior has not been reported in the native range of the species, our results suggest that some individuals in introduced predator populations may adapt their behavior to forage on novel prey in new environments, leading to behavioral and trophic specialization to actively cross the water-land interface

Convergence of marine megafauna movement patterns in coastal and open oceans

Author Posting. © The Author(s), 2017. This is the author's version of the work. It is posted here for personal use, not for redistribution. The definitive version was published in Proceedings of the National Academy of Sciences of the United States of America 115 (2018): 3072-3077, doi:10.1073/pnas.1716137115.The extent of increasing anthropogenic impacts on large marine vertebrates partly depends on the animals’ movement patterns. Effective conservation requires identification of the key drivers of movement including intrinsic properties and extrinsic constraints associated with the dynamic nature of the environments the animals inhabit. However, the relative importance of intrinsic versus extrinsic factors remains elusive. We analyse a global dataset of 2.8 million locations from > 2,600 tracked individuals across 50 marine vertebrates evolutionarily separated by millions of years and using different locomotion modes (fly, swim, walk/paddle). Strikingly, movement patterns show a remarkable convergence, being strongly conserved across species and independent of body length and mass, despite these traits ranging over 10 orders of magnitude among the species studied. This represents a fundamental difference between marine and terrestrial vertebrates not previously identified, likely linked to the reduced costs of locomotion in water. Movement patterns were primarily explained by the interaction between species-specific traits and the habitat(s) they move through, resulting in complex movement patterns when moving close to coasts compared to more predictable patterns when moving in open oceans. This distinct difference may be associated with greater complexity within coastal micro-habitats, highlighting a critical role of preferred habitat in shaping marine vertebrate global movements. Efforts to develop understanding of the characteristics of vertebrate movement should consider the habitat(s) through which they move to identify how movement patterns will alter with forecasted severe ocean changes, such as reduced Arctic sea ice cover, sea level rise and declining oxygen content.Workshops funding granted by the UWA Oceans Institute, AIMS, and KAUST. AMMS was supported by an ARC Grant DE170100841 and an IOMRC (UWA, AIMS, CSIRO) fellowship; JPR by MEDC (FPU program, Spain); DWS by UK NERC and Save Our Seas Foundation; NQ by FCT (Portugal); MMCM by a CAPES fellowship (Ministry of Education)

Differences in foraging strategy and maternal behaviour between two sympatric fur seal species at the Crozet Islands

Marine top-predators such as marine mammals forage in a heterogeneous environment according to their energetic requirements and to the variation in environmental characteristics. In this study, the behaviour of breeding females in 2 sympatric fur seal species, Antarctic fur seal Arctocephalus gazella and Subantarctic fur seal A. tropicalis, was investigated in relation to foraging effort. Foraging effort was hypothesised to be greater in Antarctic fur seal than in Subantarctic fur seal due to their shorter lactation period. Using satellite telemetry, time-depth recorders and satellite images of sea-surface temperature and chlorophyll a concentration, the foraging grounds, the at-sea activity budgets and the environmental features were determined for both species breeding on the Crozet Archipelago. Foraging cycle duration was similar for the 2 species, and the seals exhibited similar at-sea activity budgets. Only the proportion of time spent at sea was higher in Antarctic fur seals. Separate foraging areas were identified for the 2 species. Antarctic fur seal distribution was related to bathymetric features, while we did not find any direct relationship between chlorophyll a concentration and seal foraging areas. Our results suggest that Antarctic fur seals tend to respond to the higher needs of their pups by having a higher foraging efficiency and concentrating their foraging activity in the most productive areas

Deux mille mètres sous les mers (stratégies d'acquisition des ressources et réponses comportementales des éléphants de mer de Kerguelen aux structures physiques de l'Océan Austral)

Comprendre comment les organismes exploitent les ressources de leur environnement est une voie de recherche centrale en écologie. Ce travail de thèse décrit tout d abord les stratégies d acquisition des ressources des éléphants de mer (Mirounga leonina) de Kerguelen et tente, ensuite, de mettre en relation le comportement alimentaire de cette espèce avec les variables environnementales et les structures physiques de l Océan Austral. Les éléphants de mer de Kerguelen se distribuent sur une très large superficie mais concentrent l essentiel de leur activité alimentaire dans des secteurs particuliers de l océan. En bordure du continent antarctique ou au sein de la zone du front polaire, leur comportement est respectivement influencé par la glace de mer péri-antarctique et les zones tourbillonnaires. La répartition et la prévisibilité des ressources n expliquent pas la totalité des ajustements dans leurs déplacements et leurs comportements de plongée. Cette étude s intègre à part entière dans un projet inter-disciplinaire international visant d une part à comparer le comportement alimentaires des trois principales populations de l Océan Austral et ainsi contribuer à la compréhension de leurs démographies respectives et d autre part à accroître la quantité de données océanographiques pour cette partie du globe.LA ROCHELLE-BU (173002101) / SudocSudocFranceF

La Réserve de la biosphère de la mer d’Iroise: un SIG en milieu insulaire

The Mer d’Iroise Biosphere Reserve GIS covers the intertidal zone. A set of maps is proposed, based on the combination of two parameters which are essential to fauna zonation. ABSTRACTLe domaine maritime de la base de données de la Réserve de la Biosphère de la mer d’Iroise s’étend à la stratification biologique de l’estran. La combinaison de deux paramètres déterminants pour la répartition de la faune intertidale permet de réaliser une première synthèse cartographique.El sector marítimo de la base de datos de la Reserva de la Biosfera del Mar de Iroise abarca la estratificación biológica del estero. La combinación de dos parámetros determinantes en cuanto a la repartición de la fauna de la zona permite realizar una primera síntesis cartográfica. RESUMENGourmelon Françoise, Guinet Christophe, Jean Frédéric. La Réserve de la biosphère de la mer d’Iroise: un SIG en milieu insulaire. In: Mappemonde, 1993/4. Facettes de SIG. pp. 28-29

Dissolved Oxygen Sensor in Animal-Borne Instruments: An Innovation for Monitoring the Health of Oceans and Investigating the Functioning of Marine Ecosystems

International audienceThe current decline in dissolved oxygen concentration within the oceans is a sensitive indicator of the effect of climate change on marine environment. However the impact of its declining on marine life and ecosystems’ health is still quite unclear because of the difficulty in obtaining in situ data, especially in remote areas, like the Southern Ocean (SO). Southern elephant seals (Mirounga leonina) proved to be a relevant alternative to the traditional oceanographic platforms to measure physical and biogeochemical structure of oceanic regions rarely observed. In this study, we use a new stage of development in biologging technology to draw a picture of dissolved oxygen concentration in the SO. We present the first results obtained from a dissolved oxygen sensor added to Argos CTD-SRDL tags and deployed on 5 female elephant seals at Kerguelen. From October 2010 and October 2011, 742 oxygen profiles associated with temperature and salinity measurements were recorded. Whether a part of the data must be considered cautiously, especially because of offsets and temporal drifts of the sensors, the range of values recorded was consistent with a concomitant survey conducted from a research vessel (Keops-2 project). Once again, elephant seals reinforced the relationship between marine ecology and oceanography, delivering essential information about the water masses properties and the biological status of the Southern Ocean. But more than the presentation of a new stage of development in animal-borne instrumentation, this pilot study opens a new field of investigation in marine ecology and could be enlarged in a near future to other key marine predators, especially large fish species like swordfish, tuna or sharks, for which dissolved oxygen is expected to play a crucial role in distribution and behaviour

Delineation of the southern elephant seal׳s main foraging environments defined by temperature and light conditions

International audienceChanges in marine environments, induced by the global warming, are likely to influence the prey field distribution and consequently the foraging behaviour and the distribution of top marine predators. Thanks to bio-logging, the simultaneous measurements of fine-scale foraging behaviors and oceanographic parameters by predators allow characterizing their foraging environments and provide insights into their prey distribution. In this context, we propose to delimit and to characterize the foraging environments of a marine predator, the Southern Elephant Seal (SES). To do so, the relationship between oceanographic factors and prey encounter events (PEE) was investigated in 12 females SES from Kerguelen Island simultaneously equipped with accelerometers and with a range of physical sensors (temperature, light and depth). PEEs were assessed from the accelerometer data at high spatio-temporal precision while the physical sensors allowed the continuous monitoring of environmental conditions encountered by the SES when diving. First, visited and foraging environments were distinguished according to the oceanographic conditions encountered in the absence and in presence of PEE. Then, a hierarchical classification of the physical parameters recorded during PEEs led to the distinction of five different foraging environments. These foraging environments were structured according to the main frontal systems of the SO. One was located north to the subantarctic front (SAF) and characterized by high temperature and depth, and low light levels. Another, characterized by intermediate levels of temperature, light and depth, was located between the SAF and the polar front (PF). And finally, the last three environments were all found south to the PF and, characterized by low temperature but highly variable depth and light levels. The large physical and/or spatial differences found between these environments suggest that, depending on the location, different prey communities are targeted by SES over a broad range of water temperature, light level and depth conditions. This result highlights the versatility of this marine predator. In addition, in most cases, PEEs were found deeper during the day than during the night, which is indicative of mesopelagic prey performing nycthemeral migration, a behaviour consistent with myctophids species thought to represent the bulk of Kerguelen SES female diets

Lyophilized proteins: influence of residual water on stability

International audienc